Publications
2022
Effect of Population Partitioning on the Probability of Silent Circulation of Poliovirus.
Bulletin of mathematical biology.
84(6)
[DOI] 10.1007/s11538-022-01014-6.
[PMID] 35507206.
2022
The role of time-varying viral shedding in modelling environmental surveillance for public health: revisiting the 2013 poliovirus outbreak in Israel.
Journal of the Royal Society, Interface.
19(190)
[DOI] 10.1098/rsif.2022.0006.
[PMID] 35582812.
2021
A runtime alterable epidemic model with genetic drift, waning immunity and vaccinations.
Journal of the Royal Society, Interface.
18(184)
[DOI] 10.1098/rsif.2021.0648.
[PMID] 34814729.
2021
Modeling the population effects of escape mutations in SARS-CoV-2 to guide vaccination strategies.
Epidemics.
36
[DOI] 10.1016/j.epidem.2021.100484.
[PMID] 34375814.
2019
Evaluating the probability of silent circulation of polio in small populations using the silent circulation statistic.
Infectious Disease Modelling.
4:239-250
[DOI] 10.1016/j.idm.2019.06.003.
[PMID] 31312777.
2018
Asymmetric transfer efficiencies between fomites and fingers: Impact on model parameterization.
American journal of infection control.
46(6):620-626
[DOI] 10.1016/j.ajic.2017.12.002.
[PMID] 29397229.
2018
Corrigendum to “Silent circulation of poliovirus in small populations” [Infectious Disease Modeling 2 (2017) 431-440].
Infectious Disease Modelling.
3:136-138
[DOI] 10.1016/j.idm.2018.02.001.
[PMID] 30839888.
2018
Epidemiology of the silent polio outbreak in Rahat, Israel, based on modeling of environmental surveillance data.
Proceedings of the National Academy of Sciences of the United States of America.
115(45):E10625-E10633
[DOI] 10.1073/pnas.1808798115.
[PMID] 30337479.
2017
Models and analyses to understand threats to polio eradication.
BMC medicine.
15(1)
[DOI] 10.1186/s12916-017-0991-5.
[PMID] 29268738.
2017
Silent circulation of poliovirus in small populations.
Infectious Disease Modelling.
2(4):431-440
[DOI] 10.1016/j.idm.2017.11.001.
[PMID] 30137721.
2015
Fomite-fingerpad transfer efficiency (pick-up and deposit) of Acinetobacter baumannii-with and without a latex glove.
American journal of infection control.
43(9):928-34
[DOI] 10.1016/j.ajic.2015.05.008.
[PMID] 26141689.
2015
Strong influence of behavioral dynamics on the ability of testing and treating HIV to stop transmission.
Scientific reports.
5
[DOI] 10.1038/srep09467.
[PMID] 25902018.
2013
Acute-stage transmission of HIV: effect of volatile contact rates.
Epidemiology (Cambridge, Mass.).
24(4):516-21
[DOI] 10.1097/EDE.0b013e318294802e.
[PMID] 23689754.
2013
Detectable signals of episodic risk effects on acute HIV transmission: strategies for analyzing transmission systems using genetic data.
Epidemics.
5(1):44-55
[DOI] 10.1016/j.epidem.2012.11.003.
[PMID] 23438430.
2013
HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis.
PLoS medicine.
10(12)
[DOI] 10.1371/journal.pmed.1001568.
[PMID] 24339751.
2013
Successes and shortcomings of polio eradication: a transmission modeling analysis.
American journal of epidemiology.
177(11):1236-45
[DOI] 10.1093/aje/kws378.
[PMID] 23592542.
2013
The dynamics of methicillin-resistant Staphylococcus aureus exposure in a hospital model and the potential for environmental intervention.
BMC infectious diseases.
13
[DOI] 10.1186/1471-2334-13-595.
[PMID] 24341774.
2012
Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection.
Statistical communications in infectious diseases.
4(1)
[PMID] 24058722.
2012
Heterogeneity in Number and Type of Sexual Contacts in a Gay Urban Cohort.
Statistical communications in infectious diseases.
4(1)
[PMID] 23638243.
2012
HIV transmissions by stage in dynamic sexual partnerships.
Journal of theoretical biology.
298:147-53
[DOI] 10.1016/j.jtbi.2011.12.021.
[PMID] 22261263.
2012
Model analysis of fomite mediated influenza transmission.
PloS one.
7(12)
[DOI] 10.1371/journal.pone.0051984.
[PMID] 23300585.
2012
Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection.
PLoS computational biology.
8(6)
[DOI] 10.1371/journal.pcbi.1002552.
[PMID] 22761556.
2011
A dynamic dose-response model to account for exposure patterns in risk assessment: a case study in inhalation anthrax.
Journal of the Royal Society, Interface.
8(57):506-17
[DOI] 10.1098/rsif.2010.0491.
[PMID] 21068030.
2011
Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec.
The Journal of infectious diseases.
204(7):1115-9
[DOI] 10.1093/infdis/jir468.
[PMID] 21881127.
2010
Dynamic sex roles among men who have sex with men and transmissions from primary HIV infection.
Epidemiology (Cambridge, Mass.).
21(5):669-75
[DOI] 10.1097/EDE.0b013e3181e9e901.
[PMID] 20585251.
2010
HIV transmission by stage of infection and pattern of sexual partnerships.
Epidemiology (Cambridge, Mass.).
21(5):676-84
[DOI] 10.1097/EDE.0b013e3181e6639f.
[PMID] 20571409.
2010
Informing optimal environmental influenza interventions: how the host, agent, and environment alter dominant routes of transmission.
PLoS computational biology.
6(10)
[DOI] 10.1371/journal.pcbi.1000969.
[PMID] 21060854.
2010
Unlocking pathogen genotyping information for public health by mathematical modeling.
Trends in microbiology.
18(9):406-12
[DOI] 10.1016/j.tim.2010.06.008.
[PMID] 20638846.
2009
Characteristics of men who have sex with men and women and women who have sex with women and men: results from the 2003 Seattle sex survey.
Sexually transmitted diseases.
36(9):541-6
[DOI] 10.1097/OLQ.0b013e3181a819db.
[PMID] 19543142.
2009
Dynamics and control of infections transmitted from person to person through the environment.
American journal of epidemiology.
170(2):257-65
[DOI] 10.1093/aje/kwp116.
[PMID] 19474071.
2009
The effect of ongoing exposure dynamics in dose response relationships.
PLoS computational biology.
5(6)
[DOI] 10.1371/journal.pcbi.1000399.
[PMID] 19503605.
2007
Mathematical model comparisons of potential non-typeable Haemophilus influenzae vaccine effects.
Journal of theoretical biology.
245(1):66-76
[PMID] 17098258.
2006
Response to Rapatski BL, Suppe F, Yorke JA. HIV epidemics driven by late disease stage transmission.
Journal of acquired immune deficiency syndromes (1999).
41(5)
[PMID] 16652045.
2005
Choosing an appropriate bacterial typing technique for epidemiologic studies.
Epidemiologic perspectives & innovations : EP+I.
2
[PMID] 16309556.
2005
Infection transmission science and models.
Japanese journal of infectious diseases.
58(6):S3-8
[PMID] 16377860.
2005
When to control endemic infections by focusing on high-risk groups.
Epidemiology (Cambridge, Mass.).
16(5):621-7
[PMID] 16135937.
2002
Modeling infection transmission- the pursuit of complexities that matter.
Epidemiology (Cambridge, Mass.).
13(6):622-4
[PMID] 12410001.
2002
Stochastic effects on endemic infection levels of disseminating versus local contacts.
Mathematical biosciences.
180:49-71
[PMID] 12387916.
2002
Uropathogenic Escherichia coli are more likely than commensal E. coli to be shared between heterosexual sex partners.
American journal of epidemiology.
156(12):1133-40
[PMID] 12480658.
Contact Details
Emails:
- Business:
- jkoopman@ufl.edu
Addresses:
- Business Mailing:
-
PO BOX 117450
GAINESVILLE FL 326110001